Kazanov Lab

Course: Mathematical Methods in Bioinformatics

Taught for MIPT students, 2011–2016

Lecture 1. Introduction. lecture slides
Lecture 2. Sequence alignment. lecture slides  — References: Durbin et al., papers.
Lecture 3. Hidden Markov Models. lecture slides  — References: Durbin et al., papers.
Lecture 4. Multiple sequence alignment. lecture slides  — References: Durbin et al.
Lecture 5. Profile HMM. lecture slides  — References: Durbin et al.
Lecture 6. Phylogenetic trees. lecture slides  — References: Durbin et al.
Lecture 7. DNA regulatory sites. lecture slides  — References: papers.
Lecture 8. Genome assembly. lecture slides  — References: papers.
Lecture 9. RNA secondary structure. lecture slides  — References: Durbin et al., papers.

References